PoplarV1, Main, Exploration, bibRecord, 000339

Identification and characterization of circular RNAs during wood formation of poplars in acclimation to low nitrogen availability.

Identifieur interne : 000339 ( Main/Exploration ); précédent : 000338; suivant : 000340

Identification and characterization of circular RNAs during wood formation of poplars in acclimation to low nitrogen availability.

Auteurs : Huimin Liu [République populaire de Chine] ; Wanwen Yu [République populaire de Chine] ; Jiangting Wu [République populaire de Chine] ; Zhuorong Li [République populaire de Chine] ; Hui Li [République populaire de Chine] ; Jing Zhou [République populaire de Chine] ; Jingjing Hu [République populaire de Chine] ; Yan Lu [République populaire de Chine]

Source :

Planta [ 1432-2048 ] ; 2020.

RBID : pubmed:31925576

Descripteurs français

KwdFr :
- ARN messager (génétique), ARN messager (métabolisme), Acclimatation (effets des médicaments et des substances chimiques), Acclimatation (génétique), Azote (pharmacologie), Bois (croissance et développement), Bois (effets des médicaments et des substances chimiques), Bois (génétique), Génome végétal (MeSH), Modèles biologiques (MeSH), Populus (croissance et développement), Populus (effets des médicaments et des substances chimiques), Populus (génétique), Régulation de l'expression des gènes végétaux (effets des médicaments et des substances chimiques), Réseaux de régulation génique (effets des médicaments et des substances chimiques), Xylème (métabolisme), microARN (génétique), microARN (métabolisme).
MESH :
- croissance et développement : Bois, Populus.
- effets des médicaments et des substances chimiques : Acclimatation, Bois, Populus, Régulation de l'expression des gènes végétaux, Réseaux de régulation génique.
- génétique : ARN messager, Acclimatation, Bois, Populus, microARN.
- métabolisme : ARN messager, Xylème, microARN.
- pharmacologie : Azote.
- Génome végétal, Modèles biologiques.

English descriptors

KwdEn :
- Acclimatization (drug effects), Acclimatization (genetics), Gene Expression Regulation, Plant (drug effects), Gene Regulatory Networks (drug effects), Genome, Plant (MeSH), MicroRNAs (genetics), MicroRNAs (metabolism), Models, Biological (MeSH), Nitrogen (pharmacology), Populus (drug effects), Populus (genetics), Populus (growth & development), RNA, Circular (genetics), RNA, Circular (metabolism), RNA, Messenger (genetics), RNA, Messenger (metabolism), Wood (drug effects), Wood (genetics), Wood (growth & development), Xylem (metabolism).
MESH :
- chemical , genetics : MicroRNAs, RNA, Circular, RNA, Messenger.
- drug effects : Acclimatization, Gene Expression Regulation, Plant, Gene Regulatory Networks, Populus, Wood.
- genetics : Acclimatization, Populus, Wood.
- growth & development : Populus, Wood.
- chemical , metabolism : MicroRNAs, RNA, Circular, RNA, Messenger, Xylem.
- chemical , pharmacology : Nitrogen.
- Genome, Plant, Models, Biological.

Abstract

MAIN CONCLUSION

Circular RNA (circRNA) identification and expression profiles, and construction of circRNAs-miRNAs-mRNAs networks indicates that circRNAs are involved in wood formation of poplars in acclimation to low nitrogen availability. Circular RNAs (circRNAs) are covalently closed non-coding RNAs that play pivotal roles in various biological processes. However, circRNAs' roles in wood formation of poplars in acclimation to low nitrogen (N) availability are currently unknown. Here, we undertook a systematic identification and characterization of circRNAs in the wood of Populus × canescens exposed to either 50 (low N) or 500 (normal N) µM NH

DOI: 10.1007/s00425-020-03338-w
PubMed: 31925576

Affiliations:

République populaire de Chine

Links toward previous steps (curation, corpus...)

to stream Main, to step Corpus: 000516
to stream Main, to step Curation: 000516

Le document en format XML

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<series><title level="j">Planta</title>
<idno type="eISSN">1432-2048</idno>
<imprint><date when="2020" type="published">2020</date>
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<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Acclimatization (drug effects)</term>
<term>Acclimatization (genetics)</term>
<term>Gene Expression Regulation, Plant (drug effects)</term>
<term>Gene Regulatory Networks (drug effects)</term>
<term>Genome, Plant (MeSH)</term>
<term>MicroRNAs (genetics)</term>
<term>MicroRNAs (metabolism)</term>
<term>Models, Biological (MeSH)</term>
<term>Nitrogen (pharmacology)</term>
<term>Populus (drug effects)</term>
<term>Populus (genetics)</term>
<term>Populus (growth & development)</term>
<term>RNA, Circular (genetics)</term>
<term>RNA, Circular (metabolism)</term>
<term>RNA, Messenger (genetics)</term>
<term>RNA, Messenger (metabolism)</term>
<term>Wood (drug effects)</term>
<term>Wood (genetics)</term>
<term>Wood (growth & development)</term>
<term>Xylem (metabolism)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>ARN messager (génétique)</term>
<term>ARN messager (métabolisme)</term>
<term>Acclimatation (effets des médicaments et des substances chimiques)</term>
<term>Acclimatation (génétique)</term>
<term>Azote (pharmacologie)</term>
<term>Bois (croissance et développement)</term>
<term>Bois (effets des médicaments et des substances chimiques)</term>
<term>Bois (génétique)</term>
<term>Génome végétal (MeSH)</term>
<term>Modèles biologiques (MeSH)</term>
<term>Populus (croissance et développement)</term>
<term>Populus (effets des médicaments et des substances chimiques)</term>
<term>Populus (génétique)</term>
<term>Régulation de l'expression des gènes végétaux (effets des médicaments et des substances chimiques)</term>
<term>Réseaux de régulation génique (effets des médicaments et des substances chimiques)</term>
<term>Xylème (métabolisme)</term>
<term>microARN (génétique)</term>
<term>microARN (métabolisme)</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>MicroRNAs</term>
<term>RNA, Circular</term>
<term>RNA, Messenger</term>
</keywords>
<keywords scheme="MESH" qualifier="croissance et développement" xml:lang="fr"><term>Bois</term>
<term>Populus</term>
</keywords>
<keywords scheme="MESH" qualifier="drug effects" xml:lang="en"><term>Acclimatization</term>
<term>Gene Expression Regulation, Plant</term>
<term>Gene Regulatory Networks</term>
<term>Populus</term>
<term>Wood</term>
</keywords>
<keywords scheme="MESH" qualifier="effets des médicaments et des substances chimiques" xml:lang="fr"><term>Acclimatation</term>
<term>Bois</term>
<term>Populus</term>
<term>Régulation de l'expression des gènes végétaux</term>
<term>Réseaux de régulation génique</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Acclimatization</term>
<term>Populus</term>
<term>Wood</term>
</keywords>
<keywords scheme="MESH" qualifier="growth & development" xml:lang="en"><term>Populus</term>
<term>Wood</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ARN messager</term>
<term>Acclimatation</term>
<term>Bois</term>
<term>Populus</term>
<term>microARN</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>MicroRNAs</term>
<term>RNA, Circular</term>
<term>RNA, Messenger</term>
<term>Xylem</term>
</keywords>
<keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>ARN messager</term>
<term>Xylème</term>
<term>microARN</term>
</keywords>
<keywords scheme="MESH" qualifier="pharmacologie" xml:lang="fr"><term>Azote</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="pharmacology" xml:lang="en"><term>Nitrogen</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Genome, Plant</term>
<term>Models, Biological</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr"><term>Génome végétal</term>
<term>Modèles biologiques</term>
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<front><div type="abstract" xml:lang="en"><p><b>MAIN CONCLUSION</b>
</p>
<p>Circular RNA (circRNA) identification and expression profiles, and construction of circRNAs-miRNAs-mRNAs networks indicates that circRNAs are involved in wood formation of poplars in acclimation to low nitrogen availability. Circular RNAs (circRNAs) are covalently closed non-coding RNAs that play pivotal roles in various biological processes. However, circRNAs' roles in wood formation of poplars in acclimation to low nitrogen (N) availability are currently unknown. Here, we undertook a systematic identification and characterization of circRNAs in the wood of Populus × canescens exposed to either 50 (low N) or 500 (normal N) µM NH</p>
</div>
</front>
</TEI>
<pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">31925576</PMID>
<DateCompleted><Year>2020</Year>
<Month>09</Month>
<Day>16</Day>
</DateCompleted>
<DateRevised><Year>2020</Year>
<Month>09</Month>
<Day>16</Day>
</DateRevised>
<Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">1432-2048</ISSN>
<JournalIssue CitedMedium="Internet"><Volume>251</Volume>
<Issue>2</Issue>
<PubDate><Year>2020</Year>
<Month>Jan</Month>
<Day>10</Day>
</PubDate>
</JournalIssue>
<Title>Planta</Title>
<ISOAbbreviation>Planta</ISOAbbreviation>
</Journal>
<ArticleTitle>Identification and characterization of circular RNAs during wood formation of poplars in acclimation to low nitrogen availability.</ArticleTitle>
<Pagination><MedlinePgn>47</MedlinePgn>
</Pagination>
<ELocationID EIdType="doi" ValidYN="Y">10.1007/s00425-020-03338-w</ELocationID>
<Abstract><AbstractText Label="MAIN CONCLUSION" NlmCategory="UNASSIGNED">Circular RNA (circRNA) identification and expression profiles, and construction of circRNAs-miRNAs-mRNAs networks indicates that circRNAs are involved in wood formation of poplars in acclimation to low nitrogen availability. Circular RNAs (circRNAs) are covalently closed non-coding RNAs that play pivotal roles in various biological processes. However, circRNAs' roles in wood formation of poplars in acclimation to low nitrogen (N) availability are currently unknown. Here, we undertook a systematic identification and characterization of circRNAs in the wood of Populus × canescens exposed to either 50 (low N) or 500 (normal N) µM NH<sub>4</sub>
NO<sub>3</sub>
 using rRNA-depleted RNA-sequencing. A total of 2,509 unique circRNAs were identified, and 163 (ca. 6.5%) circRNAs were significantly differentially expressed (DE) under low N condition. We observed a positive correlation between the expression patterns of DE circRNAs and their hosting protein-coding genes. Moreover, circRNAs-miRNAs-mRNAs' networks were identified in the wood of poplars under low N availability. For instance, upregulated several circRNAs, such as circRNA1226, circRNA 1732, and circRNA392 induced increases in nuclear factor Y, subunit A1-A (NFYA1-A), NFYA1-B, and NFYA10 transcript levels via the mediation of miR169b members, which is in line with reduced xylem width and cell layers of the xylem in the wood of low N-supplied poplars. Upregulation of circRNA1006, circRNA1344, circRNA1941, circRNA901, and circRNA146 caused increased transcript level of MYB61 via the mediation of a miR5021 member, corresponding well to the higher lignin concentration in the wood of low N-treated poplars. Overall, these results indicated that DE circRNAs play an essential role in regulating gene expression via circRNAs-miRNAs-mRNAs' networks to modulate wood anatomical and chemical properties of poplars in acclimation to low N availability.</AbstractText>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Liu</LastName>
<ForeName>Huimin</ForeName>
<Initials>H</Initials>
<AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Non-Timber Forest Germplasm Enhancement and Utilization of State Forestry and Grassland Administration, Non-Timber Forest Research and Development Center, Chinese Academy of Forestry, Zhengzhou, 450003, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Yu</LastName>
<ForeName>Wanwen</ForeName>
<Initials>W</Initials>
<AffiliationInfo><Affiliation>Co-Innovation Center for the Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing, 210037, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Wu</LastName>
<ForeName>Jiangting</ForeName>
<Initials>J</Initials>
<AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Silviculture of the National Forestry and Grassland Administration, Research Institute of Forestry, Chinese Academy of Forestry, Beijing, 100091, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Li</LastName>
<ForeName>Zhuorong</ForeName>
<Initials>Z</Initials>
<AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Silviculture of the National Forestry and Grassland Administration, Research Institute of Forestry, Chinese Academy of Forestry, Beijing, 100091, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Li</LastName>
<ForeName>Hui</ForeName>
<Initials>H</Initials>
<AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding, Research Institution of Tropical Forestry, Chinese Academy of Forestry, Guangzhou, 510000, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Zhou</LastName>
<ForeName>Jing</ForeName>
<Initials>J</Initials>
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Identification and characterization of circular RNAs during wood formation of poplars in acclimation to low nitrogen availability.

Identification and characterization of circular RNAs during wood formation of poplars in acclimation to low nitrogen availability.

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